J Stomatol Oral Maxillofac Surg. 2024 Jun 8:101946. doi: 10.1016/j.jormas.2024.101946. Online ahead of print.

ABSTRACT

PURPOSE: This study aims to develop a deep learning framework for the automatic detection of the position relationship between the mandibular third molar (M3) and the mandibular canal (MC) on panoramic radiographs (PRs), to assist doctors in assessing and planning appropriate surgical interventions.

METHODS: Datasets D1 and D2 were obtained by collecting 253 PRs from a hospitals and 197 PRs from online platforms. The RPIFormer model proposed in this study was trained and validated on D1 to create a segmentation model. The CycleGAN model was trained and validated on both D1 and D2 to develop an image enhancement model. Ultimately, the segmentation and enhancement models were integrated with an object detection model to create a fully automated framework for M3 and MC detection in PRs. Experimental evaluation included calculating Dice coefficient, IoU, Recall, and Precision during the process.

RESULTS: The RPIFormer model proposed in this study achieved an average Dice coefficient of 92.56% for segmenting M3 and MC, representing a 3.06% improvement over the previous best study. The deep learning framework developed in this research enables automatic detection of M3 and MC in PRs without manual cropping, demonstrating superior detection accuracy and generalization capability.

CONCLUSION: The framework developed in this study can be applied to PRs captured in different hospitals without the need for model fine-tuning. This feature is significant for aiding doctors in accurately assessing the spatial relationship between M3 and MC, thereby determining the optimal treatment plan to ensure patients' oral health and surgical safety.

PMID:38857691 | DOI:10.1016/j.jormas.2024.101946

Clin Oral Implants Res. 2024 Jun 10. doi: 10.1111/clr.14313. Online ahead of print.

ABSTRACT

OBJECTIVES: To investigate the accuracy of conventional and automatic artificial intelligence (AI)-based registration of cone-beam computed tomography (CBCT) with intraoral scans and to evaluate the impact of user's experience, restoration artifact, number of missing teeth, and free-ended edentulous area.

MATERIALS AND METHODS: Three initial registrations were performed for each of the 150 randomly selected patients, in an implant planning software: one from an experienced user, one from an inexperienced operator, and one from a randomly selected post-graduate student of implant dentistry. Six more registrations were performed for each dataset by the experienced clinician: implementing a manual or an automatic refinement, selecting 3 small or 3 large in-diameter surface areas and using multiple small or multiple large in-diameter surface areas. Finally, an automatic AI-driven registration was performed, using the AI tools that were integrated into the utilized implant planning software. The accuracy between each type of registration was measured using linear measurements between anatomical landmarks in metrology software.

RESULTS: Fully automatic-based AI registration was not significantly different from the conventional methods tested for patients without restorations. In the presence of multiple restoration artifacts, user's experience was important for an accurate registration. Registrations' accuracy was affected by the number of free-ended edentulous areas, but not by the absolute number of missing teeth (p < .0083).

CONCLUSIONS: In the absence of imaging artifacts, automated AI-based registration of CBCT data and model scan data can be as accurate as conventional superimposition methods. The number and size of selected superimposition areas should be individually chosen depending on each clinical situation.

PMID:38858787 | DOI:10.1111/clr.14313

BMC Med Imaging. 2024 Jun 10;24(1):140. doi: 10.1186/s12880-024-01316-2.

ABSTRACT

OBJECTIVE: To construct the deep learning convolution neural network (CNN) model and machine learning support vector machine (SVM) model of bone remodeling of chronic maxillary sinusitis (CMS) based on CT image data to improve the accuracy of image diagnosis.

METHODS: Maxillary sinus CT data of 1000 samples in 500 patients from January 2018 to December 2021 in our hospital was collected. The first part is the establishment and testing of chronic maxillary sinusitis detection model by 461 images. The second part is the establishment and testing of the detection model of chronic maxillary sinusitis with bone remodeling by 802 images. The sensitivity, specificity and accuracy and area under the curve (AUC) value of the test set were recorded, respectively.

RESULTS: Preliminary application results of CT based AI in the diagnosis of chronic maxillary sinusitis and bone remodeling. The sensitivity, specificity and accuracy of the test set of 93 samples of CMS, were 0.9796, 0.8636 and 0.9247, respectively. Simultaneously, the value of AUC was 0.94. And the sensitivity, specificity and accuracy of the test set of 161 samples of CMS with bone remodeling were 0.7353, 0.9685 and 0.9193, respectively. Simultaneously, the value of AUC was 0.89.

CONCLUSION: It is feasible to use artificial intelligence research methods such as deep learning and machine learning to automatically identify CMS and bone remodeling in MSCT images of paranasal sinuses, which is helpful to standardize imaging diagnosis and meet the needs of clinical application.

PMID:38858631 | DOI:10.1186/s12880-024-01316-2

BMC Cancer. 2024 Jun 10;24(1):710. doi: 10.1186/s12885-024-12459-4.

ABSTRACT

BACKGROUND: Papillary thyroid carcinoma (PTC) is globally prevalent and associated with an increased risk of lymph node metastasis (LNM). The role of cancer-associated fibroblasts (CAFs) in PTC remains unclear.

METHODS: We collected postoperative pathological hematoxylin-eosin (HE) slides from 984 included patients with PTC to analyze the density of CAF infiltration at the invasive front of the tumor using QuPath software. The relationship between CAF density and LNM was assessed. Single-cell RNA sequencing (scRNA-seq) data from GSE193581 and GSE184362 datasets were integrated to analyze CAF infiltration in PTC. A comprehensive suite of in vitro experiments, encompassing EdU labeling, wound scratch assays, Transwell assays, and flow cytometry, were conducted to elucidate the regulatory role of CD36+CAF in two PTC cell lines, TPC1 and K1.

RESULTS: A significant correlation was observed between high fibrosis density at the invasive front of the tumor and LNM. Analysis of scRNA-seq data revealed metastasis-associated myoCAFs with robust intercellular interactions. A diagnostic model based on metastasis-associated myoCAF genes was established and refined through deep learning methods. CD36 positive expression in CAFs can significantly promote the proliferation, migration, and invasion abilities of PTC cells, while inhibiting the apoptosis of PTC cells.

CONCLUSION: This study addresses the significant issue of LNM risk in PTC. Analysis of postoperative HE pathological slides from a substantial patient cohort reveals a notable association between high fibrosis density at the invasive front of the tumor and LNM. Integration of scRNA-seq data comprehensively analyzes CAF infiltration in PTC, identifying metastasis-associated myoCAFs with strong intercellular interactions. In vitro experimental results indicate that CD36 positive expression in CAFs plays a promoting role in the progression of PTC. Overall, these findings provide crucial insights into the function of CAF subset in PTC metastasis.

PMID:38858612 | DOI:10.1186/s12885-024-12459-4

Sci Rep. 2024 Jun 10;14(1):13335. doi: 10.1038/s41598-024-64376-y.

ABSTRACT

Data-driven approaches are often utilized to model and generate vibrotactile feedback and sounds for rigid stylus-based interaction. Nevertheless, in prior research, these two modalities were typically addressed separately due to challenges related to synchronization and design complexity. To this end, we introduce a novel multimodal multitask deep learning framework. In this paper, we developed a comprehensive end-to-end data-driven system that encompasses the capture of contact acceleration signals and sound data from various texture surfaces. This framework introduces novel encoder-decoder networks for modeling and rendering vibrotactile feedback through an actuator while routing sound to headphones. The proposed encoder-decoder networks incorporate stacked transformers with convolutional layers to capture both local variability and overall trends within the data. To the best of our knowledge, this is the first attempt to apply transformer-based data-driven approach for modeling and rendering of vibrotactile signals as well as sounds during tool-surface interactions. In numerical evaluations, the proposed framework demonstrates a lower RMS error compared to state-of-the-art models for both vibrotactile signals and sound data. Additionally, subjective similarity evaluation also confirm the superiority of proposed method over state-of-the-art.

PMID:38858511 | DOI:10.1038/s41598-024-64376-y

Sci Rep. 2024 Jun 10;14(1):13249. doi: 10.1038/s41598-024-63831-0.

ABSTRACT

Malaria is an extremely malignant disease and is caused by the bites of infected female mosquitoes. This disease is not only infectious among humans, but among animals as well. Malaria causes mild symptoms like fever, headache, sweating and vomiting, and muscle discomfort; severe symptoms include coma, seizures, and kidney failure. The timely identification of malaria parasites is a challenging and chaotic endeavor for health staff. An expert technician examines the schematic blood smears of infected red blood cells through a microscope. The conventional methods for identifying malaria are not efficient. Machine learning approaches are effective for simple classification challenges but not for complex tasks. Furthermore, machine learning involves rigorous feature engineering to train the model and detect patterns in the features. On the other hand, deep learning works well with complex tasks and automatically extracts low and high-level features from the images to detect disease. In this paper, EfficientNet, a deep learning-based approach for detecting Malaria, is proposed that uses red blood cell images. Experiments are carried out and performance comparison is made with pre-trained deep learning models. In addition, k-fold cross-validation is also used to substantiate the results of the proposed approach. Experiments show that the proposed approach is 97.57% accurate in detecting Malaria from red blood cell images and can be beneficial practically for medical healthcare staff.

PMID:38858481 | DOI:10.1038/s41598-024-63831-0

Sci Rep. 2024 Jun 10;14(1):13251. doi: 10.1038/s41598-024-63762-w.

ABSTRACT

Cervical cancer stands as a prevalent gynaecologic malignancy affecting women globally, often linked to persistent human papillomavirus infection. Biomarkers associated with cervical cancer, including VEGF-A, VEGF-B, VEGF-C, VEGF-D, and VEGF-E, show upregulation and are linked to angiogenesis and lymphangiogenesis. This research aims to employ in-silico methods to target tyrosine kinase receptor proteins-VEGFR-1, VEGFR-2, and VEGFR-3, and identify novel inhibitors for Vascular Endothelial Growth Factors receptors (VEGFRs). A comprehensive literary study was conducted which identified 26 established inhibitors for VEGFR-1, VEGFR-2, and VEGFR-3 receptor proteins. Compounds with high-affinity scores, including PubChem ID-25102847, 369976, and 208908 were chosen from pre-existing compounds for creating Deep Learning-based models. RD-Kit, a Deep learning algorithm, was used to generate 43 million compounds for VEGFR-1, VEGFR-2, and VEGFR-3 targets. Molecular docking studies were conducted on the top 10 molecules for each target to validate the receptor-ligand binding affinity. The results of Molecular Docking indicated that PubChem IDs-71465,645 and 11152946 exhibited strong affinity, designating them as the most efficient molecules. To further investigate their potential, a Molecular Dynamics Simulation was performed to assess conformational stability, and a pharmacophore analysis was also conducted for indoctrinating interactions.

PMID:38858458 | DOI:10.1038/s41598-024-63762-w

Sci Rep. 2024 Jun 10;14(1):13267. doi: 10.1038/s41598-024-64080-x.

ABSTRACT

The precise identification of surface imperfections in steel strips is crucial for ensuring steel product quality. To address the challenges posed by the substantial model size and computational complexity in current algorithms for detecting surface defects in steel strips, this paper introduces SS-YOLO (YOLOv7 for Steel Strip), an enhanced lightweight YOLOv7 model. This method replaces the CBS module in the backbone network with a lightweight MobileNetv3 network, reducing the model size and accelerating the inference time. The D-SimSPPF module, which integrates depth separable convolution and a parameter-free attention mechanism, was specifically designed to replace the original SPPCSPC module within the YOLOv7 network, expanding the receptive field and reducing the number of network parameters. The parameter-free attention mechanism SimAM is incorporated into both the neck network and the prediction output section, enhancing the ability of the model to extract essential features of strip surface defects and improving detection accuracy. The experimental results on the NEU-DET dataset show that SS-YOLO achieves a 97% mAP50 accuracy, which is a 4.5% improvement over that of YOLOv7. Additionally, there was a 79.3% reduction in FLOPs(G) and a 20.7% decrease in params. Thus, SS-YOLO demonstrates an effective balance between detection accuracy and speed while maintaining a lightweight profile.

PMID:38858448 | DOI:10.1038/s41598-024-64080-x

Sci Rep. 2024 Jun 10;14(1):13348. doi: 10.1038/s41598-024-64082-9.

ABSTRACT

This study aims to design a classification technique suitable for Zhuang ethnic clothing images by integrating the concept of supply-demand matching and convolutional neural networks. Firstly, addressing the complex structure and unique visual style of Zhuang ethnic clothing, this study proposes an image resolution model based on supply-demand matching and convolutional networks. By integrating visual style and label constraints, this model accurately extracts local features. Secondly, the model's effectiveness and resolution performance are analyzed through various performance metrics in experiments. The results indicate a significant improvement in detection accuracy at different annotation points. The model outperforms other comparative methods in pixel accuracy (90.5%), average precision (83.7%), average recall (80.1%), and average F1 score (81.2%). Next, this study introduces a clothing image classification algorithm based on key points and channel attention. Through key point detection and channel attention mechanisms, image features are optimized, enabling accurate classification and attribute prediction of Zhuang ethnic clothing. Experimental results demonstrate a notable enhancement in category classification and attribute prediction, with classification accuracy and recall exceeding 90% in top-k tasks, showcasing outstanding performance. In conclusion, this study provides innovative approaches and effective solutions for deep learning classification of Zhuang ethnic clothing images.

PMID:38858436 | DOI:10.1038/s41598-024-64082-9

Eur J Nucl Med Mol Imaging. 2024 Jun 11. doi: 10.1007/s00259-024-06731-9. Online ahead of print.

ABSTRACT

Colorectal cancer remains a major cause of cancer death and morbidity worldwide. Surgery is a major treatment modality for primary and, increasingly, secondary curative therapy. However, with more patients being diagnosed with early stage and premalignant disease manifesting as large polyps, greater accuracy in diagnostic and therapeutic precision is needed right from the time of first endoscopic encounter. Rapid advancements in the field of artificial intelligence (AI), coupled with widespread availability of near infrared imaging (currently based around indocyanine green (ICG)) can enable colonoscopic tissue classification and prognostic stratification for significant polyps, in a similar manner to contemporary dynamic radiological perfusion imaging but with the advantage of being able to do so directly within interventional procedural time frames. It can provide an explainable method for immediate digital biopsies that could guide or even replace traditional forceps biopsies and provide guidance re margins (both areas where current practice is only approximately 80% accurate prior to definitive excision). Here, we discuss the concept and practice of AI enhanced ICG perfusion analysis for rectal cancer surgery while highlighting recent and essential near-future advancements. These include breakthrough developments in computer vision and time series analysis that allow for real-time quantification and classification of fluorescent perfusion signals of rectal cancer tissue intraoperatively that accurately distinguish between normal, benign, and malignant tissues in situ endoscopically, which are now undergoing international prospective validation (the Horizon Europe CLASSICA study). Next stage advancements may include detailed digital characterisation of small rectal malignancy based on intraoperative assessment of specific intratumoral fluorescent signal pattern. This could include T staging and intratumoral molecular process profiling (e.g. regarding angiogenesis, differentiation, inflammatory component, and tumour to stroma ratio) with the potential to accurately predict the microscopic local response to nonsurgical treatment enabling personalised therapy via decision support tools. Such advancements are also applicable to the next generation fluorophores and imaging agents currently emerging from clinical trials. In addition, by providing an understandable, applicable method for detailed tissue characterisation visually, such technology paves the way for acceptance of other AI methodology during surgery including, potentially, deep learning methods based on whole screen/video detailing.

PMID:38858280 | DOI:10.1007/s00259-024-06731-9

J Imaging Inform Med. 2024 Jun 10. doi: 10.1007/s10278-024-01159-x. Online ahead of print.

ABSTRACT

To develop a robust segmentation model, encoding the underlying features/structures of the input data is essential to discriminate the target structure from the background. To enrich the extracted feature maps, contrastive learning and self-learning techniques are employed, particularly when the size of the training dataset is limited. In this work, we set out to investigate the impact of contrastive learning and self-learning on the performance of the deep learning-based semantic segmentation. To this end, three different datasets were employed used for brain tumor and hippocampus delineation from MR images (BraTS and Decathlon datasets, respectively) and kidney segmentation from CT images (Decathlon dataset). Since data augmentation techniques are also aimed at enhancing the performance of deep learning methods, a deformable data augmentation technique was proposed and compared with contrastive learning and self-learning frameworks. The segmentation accuracy for the three datasets was assessed with and without applying data augmentation, contrastive learning, and self-learning to individually investigate the impact of these techniques. The self-learning and deformable data augmentation techniques exhibited comparable performance with Dice indices of 0.913 ± 0.030 and 0.920 ± 0.022 for kidney segmentation, 0.890 ± 0.035 and 0.898 ± 0.027 for hippocampus segmentation, and 0.891 ± 0.045 and 0.897 ± 0.040 for lesion segmentation, respectively. These two approaches significantly outperformed the contrastive learning and the original model with Dice indices of 0.871 ± 0.039 and 0.868 ± 0.042 for kidney segmentation, 0.872 ± 0.045 and 0.865 ± 0.048 for hippocampus segmentation, and 0.870 ± 0.049 and 0.860 ± 0.058 for lesion segmentation, respectively. The combination of self-learning with deformable data augmentation led to a robust segmentation model with no outliers in the outcomes. This work demonstrated the beneficial impact of self-learning and deformable data augmentation on organ and lesion segmentation, where no additional training datasets are needed.

PMID:38858260 | DOI:10.1007/s10278-024-01159-x

Invest Radiol. 2024 Jun 11. doi: 10.1097/RLI.0000000000001093. Online ahead of print.

ABSTRACT

OBJECTIVES: The aim of this study was to compare deep learning reconstructed (DLR) 0.55 T magnetic resonance imaging (MRI) quality, identification, and grading of structural anomalies and reader confidence levels with conventional 3 T knee MRI in patients with knee pain following trauma.

MATERIALS AND METHODS: This prospective study of 26 symptomatic patients (5 women) includes 52 paired DLR 0.55 T and conventional 3 T MRI examinations obtained in 1 setting. A novel, commercially available DLR algorithm was employed for 0.55 T image reconstruction. Four board-certified radiologists reviewed all images independently and graded image quality, noted structural anomalies and their respective reporting confidence levels for the presence or absence, as well as grading of bone, cartilage, meniscus, ligament, and tendon lesions. Image quality and reader confidence levels were compared (P < 0.05, significant), and MRI findings were correlated between 0.55 T and 3 T MRI using Cohen kappa (κ).

RESULTS: In reader's consensus, good image quality was found for DLR 0.55 T MRI and 3 T MRI (3.8 vs 4.1/5 points, P = 0.06). There was near-perfect agreement between 0.55 T DLR and 3 T MRI regarding the identification of structural anomalies for all readers (each κ ≥ 0.80). Substantial to near-perfection agreement between 0.55 T and 3 T MRI was reported for grading of cartilage (κ = 0.65-0.86) and meniscus lesions (κ = 0.71-1.0). High confidence levels were found for all readers for DLR 0.55 T and 3 T MRI, with 3 readers showing higher confidence levels for reporting cartilage lesions on 3 T MRI.

CONCLUSIONS: In conclusion, new-generation 0.55 T DLR MRI provides good image quality, comparable to conventional 3 T MRI, and allows for reliable identification of internal derangement of the knee with high reader confidence.

PMID:38857414 | DOI:10.1097/RLI.0000000000001093

IEEE Trans Med Imaging. 2024 Jun 10;PP. doi: 10.1109/TMI.2024.3411933. Online ahead of print.

ABSTRACT

Data-driven methods have shown tremendous progress in medical image analysis. In this context, deep learning-based supervised methods are widely popular. However, they require a large amount of training data and face issues in generalisability to unseen datasets that hinder clinical translation. Endoscopic imaging data is characterised by large inter- and intra-patient variability that makes these models more challenging to learn representative features for downstream tasks. Thus, despite the publicly available datasets and datasets that can be generated within hospitals, most supervised models still underperform. While self-supervised learning has addressed this problem to some extent in natural scene data, there is a considerable performance gap in the medical image domain. In this paper, we propose to explore patch-level instance-group discrimination and penalisation of inter-class variation using additive angular margin within the cosine similarity metrics. Our novel approach enables models to learn to cluster similar representations, thereby improving their ability to provide better separation between different classes. Our results demonstrate significant improvement on all metrics over the state-of-the-art (SOTA) methods on the test set from the same and diverse datasets. We evaluated our approach for classification, detection, and segmentation. SSL-CPCD attains notable Top 1 accuracy of 79.77% in ulcerative colitis classification, an 88.62% mean average precision (mAP) for detection, and an 82.32% dice similarity coefficient for segmentation tasks. These represent improvements of over 4%, 2%, and 3%, respectively, compared to the baseline architectures. We demonstrate that our method generalises better than all SOTA methods to unseen datasets, reporting over 7% improvement.

PMID:38857149 | DOI:10.1109/TMI.2024.3411933

IEEE J Biomed Health Inform. 2024 Jun 10;PP. doi: 10.1109/JBHI.2024.3411620. Online ahead of print.

ABSTRACT

Brain anatomical age is an effective feature to assess the status of the brain, such as atypical development and aging. Although some deep learning models have been developed for estimating infant brain age, the performance of these models was unsatisfactory because few of them considered the developmental characteristics of brain anatomy during the perinatal period-the most rapid and complex developmental stage across the lifespan. The present study proposed an attention-based hemispheric relation inference network (HRINet) that takes advantage of the nature of brain structural lateralization during early development. This model captures the inter-hemispheric relationship using a graph attention mechanism and transmits lateralization information as features to describe the interactive development between bilateral hemispheres. The HRINet was used to estimate the brain age of 531 preterm and full-term neonates from the Developing Human Connectome Project (dHCP) database based on two metrics (mean curvature and sulcal depth) characterizing the folding morphology of the cortex. Our results showed that the HRINet outperformed other benchmark models in fitting the perinatal brain age, with mean absolute error of 0.53 and determination coefficient of 0.89. We also verified the generalizability of the HRINet on an extra independent dataset collected from the Gansu Provincial Maternity and Child-care Hospital. Furthermore, by applying the best-performing model to an independent dataset consisting of 47 scans of preterm infants at term-equivalent age, we showed that the predicted age was significantly lower than the chronological age, suggesting a delayed development of premature brains. Our results demonstrate the effectiveness and generalizability of the HRINet in estimating infant brain age, providing promising clinical applications for assessing neonatal brain maturity.

PMID:38857141 | DOI:10.1109/JBHI.2024.3411620

IEEE J Biomed Health Inform. 2024 Jun 10;PP. doi: 10.1109/JBHI.2024.3411792. Online ahead of print.

ABSTRACT

Electrocardiogram (ECG) is acquired during Magnetic Resonance Imaging (MRI) to monitor patients and synchronize image acquisition with the heart motion. ECG signals are highly distorted during MRI due to the complex electromagnetic environment. Automated ECG analysis is therefore complicated in this context and there is no reference technique in MRI to classify pathological heartbeats. Imaging arrhythmic patients is hence difficult in MRI. Deep Learning based heartbeat classifier have been suggested but require large databases whereas existing annotated sets of ECG in MRI are very small. We proposed a Siamese network to leverage a large database of unannotated ECGs outside MRI. This was used to develop an efficient representation of ECG signals, further used to develop a heartbeat classifier. We extensively tested several data augmentations and self-supervised learning (SSL) techniques and assessed the generalization of the obtained classifier to ECG signals acquired in MRI. These augmentations included random noises and a model simulating MRI specific artefacts. SSL pretraining improved the generalizability of heartbeat classifiers in MRI (F1=0.75) compared to Deep Learning not relying on SSL (F1=0.46) and another classical machine learning approach (F1=0.40). These promising results seem to indicate that the use of SSL techniques can learn efficient ECG signal representation, and are useful for the development of Deep Learning models even when only scarce annotated medical data are available.

PMID:38857140 | DOI:10.1109/JBHI.2024.3411792

IEEE J Biomed Health Inform. 2024 Jun 10;PP. doi: 10.1109/JBHI.2024.3411646. Online ahead of print.

ABSTRACT

Stroke, a sudden cerebrovascular ailment resulting from brain tissue damage, has prompted the use of motor imagery (MI)-based Brain-Computer Interface (BCI) systems in stroke rehabilitation. However, analyzing EEG signals from stroke patients is challenging because of their low signal-to-noise ratio and high variability. Therefore, we propose a novel approach that combines the modified S-transform (MST) and a dense graph convolutional network (DenseGCN) algorithm to enhance the MI-BCI performance across time, frequency, and space domains. MST is a time-frequency analysis method that efficiently concentrates energy in EEG signals, while DenseGCN is a deep learning model that uses EEG feature maps from each layer as inputs for subsequent layers, facilitating feature reuse and hyper-parameters optimization. Our approach outperforms conventional networks, achieving a peak classification accuracy of 90.22% and an average information transfer rate (ITR) of 68.52 bits per minute. Moreover, we conduct an in-depth analysis of the event-related desynchronization/event-related synchronization (ERD/ERS) phenomenon in the deep-level EEG features of stroke patients. Our experimental results confirm the feasibility and efficacy of the proposed approach for MI-BCI rehabilitation systems.

PMID:38857138 | DOI:10.1109/JBHI.2024.3411646

IEEE Trans Pattern Anal Mach Intell. 2024 Jun 10;PP. doi: 10.1109/TPAMI.2024.3411571. Online ahead of print.

ABSTRACT

Over the past few years, monocular depth estimation and completion have been paid more and more attention from the computer vision community because of their widespread applications. In this paper, we introduce novel physics (geometry)-driven deep learning frameworks for these two tasks by assuming that 3D scenes are constituted with piece-wise planes. Instead of directly estimating the depth map or completing the sparse depth map, we propose to estimate the surface normal and plane-to-origin distance maps or complete the sparse surface normal and distance maps as intermediate outputs. To this end, we develop a normal-distance head that outputs pixel-level surface normal and distance. Afterthat, the surface normal and distance maps are regularized by a developed plane-aware consistency constraint, which are then transformed into depth maps. Furthermore, we integrate an additional depth head to strengthen the robustness of the proposed frameworks. Extensive experiments on the NYU-Depth-v2, KITTI and SUN RGB-D datasets demonstrate that our method exceeds in performance prior state-of-the-art monocular depth estimation and completion competitors.

PMID:38857129 | DOI:10.1109/TPAMI.2024.3411571

IEEE/ACM Trans Comput Biol Bioinform. 2024 Jun 10;PP. doi: 10.1109/TCBB.2024.3411825. Online ahead of print.

ABSTRACT

AlphaFold2 has achieved a major breakthrough in end-to-end prediction for static protein structures. However, protein conformational change is considered to be a key factor in protein biological function. Inter-residue multiple distances prediction is of great significance for research on protein multiple conformations exploration. In this study, we proposed an inter-residue multiple distances prediction method, DeepMDisPre, based on an improved network which integrates triangle update, axial attention and ResNet to predict multiple distances of residue pairs. We built a dataset which contains proteins with a single structure and proteins with multiple conformations to train the network. We tested DeepMDisPre on 114 proteins with multiple conformations. The results show that the inter-residue distance distribution predicted by DeepMDisPre tends to have multiple peaks for flexible residue pairs than for rigid residue pairs. On two cases of proteins with multiple conformations, we modeled the multiple conformations relatively accurately by using the predicted inter-residue multiple distances. In addition, we also tested the performance of DeepMDisPre on 279 proteins with a single structure. Experimental results demonstrate that the average contact accuracy of DeepMDisPre is higher than that of the comparative method. In terms of static protein modeling, the average TM-score of the 3D models built by DeepMDisPre is also improved compared with the comparative method. The executable program is freely available at https://github.com/iobio-zjut/DeepMDisPre.

PMID:38857126 | DOI:10.1109/TCBB.2024.3411825

IEEE Trans Ultrason Ferroelectr Freq Control. 2024 Jun;71(6):687-697. doi: 10.1109/TUFFC.2024.3384815.

ABSTRACT

A transfer function approach was recently demonstrated to mitigate data mismatches at the acquisition level for a single ultrasound scanner in deep learning (DL)-based quantitative ultrasound (QUS). As a natural progression, we further investigate the transfer function approach and introduce a machine-to-machine (M2M) transfer function, which possesses the ability to mitigate data mismatches at a machine level. This ability opens the door to unprecedented opportunities for reducing DL model development costs, enabling the combination of data from multiple sources or scanners, or facilitating the transfer of DL models between machines. We tested the proposed method utilizing a SonixOne machine and a Verasonics machine with an L9-4 array and an L11-5 array. We conducted two types of acquisitions to obtain calibration data: stable and free-hand, using two different calibration phantoms. Without the proposed method, the mean classification accuracy when applying a model on data acquired from one system to data acquired from another system was 50%, and the mean average area under the receiver operator characteristic (ROC) curve (AUC) was 0.405. With the proposed method, mean accuracy increased to 99%, and the AUC rose to the 0.999. Additional observations include the choice of the calibration phantom led to statistically significant changes in the performance of the proposed method. Moreover, robust implementation inspired by Wiener filtering provided an effective method for transferring the domain from one machine to another machine, and it can succeed using just a single calibration view. Lastly, the proposed method proved effective when a different transducer was used in the test machine.

PMID:38857123 | DOI:10.1109/TUFFC.2024.3384815

ACS Sens. 2024 Jun 10. doi: 10.1021/acssensors.4c00471. Online ahead of print.

ABSTRACT

This study presents a novel, ultralow-power single-sensor-based electronic nose (e-nose) system for real-time gas identification, distinguishing itself from conventional sensor-array-based e-nose systems, whose power consumption and cost increase with the number of sensors. Our system employs a single metal oxide semiconductor (MOS) sensor built on a suspended 1D nanoheater, driven by duty cycling─characterized by repeated pulsed power inputs. The sensor's ultrafast thermal response, enabled by its small size, effectively decouples the effects of temperature and surface charge exchange on the MOS nanomaterial's conductivity. This provides distinct sensing signals that alternate between responses coupled with and decoupled from the thermally enhanced conductivity, all within a single time domain during duty cycling. The magnitude and ratio of these dual responses vary depending on the gas type and concentration, facilitating the early stage gas identification of five gas types within 30 s via a convolutional neural network (classification accuracy = 93.9%, concentration regression error = 19.8%). Additionally, the duty-cycling mode significantly reduces power consumption by up to 90%, lowering it to 160 μW to heat the sensor to 250 °C. Manufactured using only wafer-level batch microfabrication processes, this innovative e-nose system promises the facile implementation of battery-driven, long-term, and cost-effective IoT monitoring systems.

PMID:38857120 | DOI:10.1021/acssensors.4c00471