Semantic Web
Toward Mapping an NGSI-LD Context Model on RDF Graph Approaches: A Comparison Study
Sensors (Basel). 2022 Jun 24;22(13):4798. doi: 10.3390/s22134798.
ABSTRACT
A considerable number of Internet of Things deployments are isolated from specific solutions, from devices to data platforms. Standardized data models were proposed to overcome the interoperability gap between these deployments. Next generation service interfaces-linked data (NGSI-LD) is one of the proposed platforms that exploits linked data and proposes an information model and an application programming interface (API) for easy use and standard management of context information. The NGSI-LD information model is based on JSON for Linked Data (JSON-LD) as a serialization format for context information. This efficiently exploits the potential of semantics and linked open data. However, the NGSI-LD graph API and query language are still theoretically defined and limited to some preliminary works. Consequently, current NGSI-LD implementations are mainly based on traditional databases, where the JSON-LD serialization is supported but not exploited owing to the difficulties in defining and implementing new NGSI-LD based Graph APIs. One of the basic solutions is the use of an RDF store for NGSI-LD payloads because these types of databases are well defined and maintained and will not need any added effort for JSON-LD based payloads. However, the main complication at this level is the use of reification to annotate relationships. This study focused on both aspects of exploiting the semantics of NGSI-LD by proposing standardized mapping mechanisms to RDF graphs without reifying JSON-LD payloads and with respect to the NGSI-LD context model and API. Our main proposals highlight that exploiting the RDF store for processing NGSI-LD data semantically is feasible and uncomplicated. We illustrated the proposed mapping approaches with real use-case examples and a possible exploitation of semantic approaches.
PMID:35808295 | PMC:PMC9269225 | DOI:10.3390/s22134798
Semantics of Dairy Fermented Foods: A Microbiologist's Perspective
Foods. 2022 Jun 29;11(13):1939. doi: 10.3390/foods11131939.
ABSTRACT
Food ontologies are acquiring a central role in human nutrition, providing a standardized terminology for a proper description of intervention and observational trials. In addition to bioactive molecules, several fermented foods, particularly dairy products, provide the host with live microorganisms, thus carrying potential "genetic/functional" nutrients. To date, a proper ontology to structure and formalize the concepts used to describe fermented foods is lacking. Here we describe a semantic representation of concepts revolving around what consuming fermented foods entails, both from a technological and health point of view, focusing actions on kefir and Parmigiano Reggiano, as representatives of fresh and ripened dairy products. We included concepts related to the connection of specific microbial taxa to the dairy fermentation process, demonstrating the potential of ontologies to formalize the various gene pathways involved in raw ingredient transformation, connect them to resulting metabolites, and finally to their consequences on the fermented product, including technological, health and sensory aspects. Our work marks an improvement in the ambition of creating a harmonized semantic model for integrating different aspects of modern nutritional science. Such a model, besides formalizing a multifaceted knowledge, will be pivotal for a rich annotation of data in public repositories, as a prerequisite to generalized meta-analysis.
PMID:35804753 | DOI:10.3390/foods11131939
HistoML, a markup language for representation and exchange of histopathological features in pathology images
Sci Data. 2022 Jul 8;9(1):387. doi: 10.1038/s41597-022-01505-0.
ABSTRACT
The study of histopathological phenotypes is vital for cancer research and medicine as it links molecular mechanisms to disease prognosis. It typically involves integration of heterogenous histopathological features in whole-slide images (WSI) to objectively characterize a histopathological phenotype. However, the large-scale implementation of phenotype characterization has been hindered by the fragmentation of histopathological features, resulting from the lack of a standardized format and a controlled vocabulary for structured and unambiguous representation of semantics in WSIs. To fill this gap, we propose the Histopathology Markup Language (HistoML), a representation language along with a controlled vocabulary (Histopathology Ontology) based on Semantic Web technologies. Multiscale features within a WSI, from single-cell features to mesoscopic features, could be represented using HistoML which is a crucial step towards the goal of making WSIs findable, accessible, interoperable and reusable (FAIR). We pilot HistoML in representing WSIs of kidney cancer as well as thyroid carcinoma and exemplify the uses of HistoML representations in semantic queries to demonstrate the potential of HistoML-powered applications for phenotype characterization.
PMID:35803960 | DOI:10.1038/s41597-022-01505-0
Construction and Research on Chinese Semantic Mapping Based on Linguistic Features and Sparse Self-Learning Neural Networks
Comput Intell Neurosci. 2022 Jun 20;2022:2315802. doi: 10.1155/2022/2315802. eCollection 2022.
ABSTRACT
In this paper, we adopt the algorithms of linguistic feature Rong and sparse self-learning neural network to conduct an in-depth study and analysis of Chinese semantic mapping, which complements the emotion semantic representation ability of traditional word embedding and fully explores the emotion semantic information contained in the text in the task preprocessing stage. We incorporate various semantic features such as lexical information and location information to make the model have richer emotion semantic expression, and the model also uses an attention mechanism to allow various features to interact and abstract deeper contextual internal semantic associations to improve the model's sentiment classification performance. Finally, experiments are conducted on two publicly available English sentiment classification corpora, and the results prove that the model outperforms other comparison models and effectively improves the sentiment classification performance. The model uses deep memory networks and capsule networks to construct a transfer learning framework and effectively leverages the transfer learning properties of capsule networks to transfer knowledge embedded in large-scale labeled data from similar domains to the target domain, improving the classification performance on small data sets. The use of multidimensional combined features compensates for the lack of a one-dimensional feature attention mechanism, while multiple domain category-based attention computation layers are superimposed to obtain deeper domain-specific sentiment feature information. Based on the segmented convolutional neural network, the model first introduces the dependent subtree of relational attributes to obtain the position weights of each word in the sentence, then introduces domain ontology knowledge in the output layer to constrain the extraction results, and conducts experimental comparison through the data set to verify the validity of the model, which ensures the accuracy of the network term entity and relational attribute recognition extraction and makes the knowledge map constructed in this paper. It ensures the accuracy of the extraction rate of the web term entities and relationship attributes and makes the knowledge map constructed in this paper more factual.
PMID:35769283 | PMC:PMC9236845 | DOI:10.1155/2022/2315802
Piano Teaching Knowledge Graph Construction Based on Cross-Media Data Analysis and Semantic Network
Comput Intell Neurosci. 2022 Jun 16;2022:5499593. doi: 10.1155/2022/5499593. eCollection 2022.
ABSTRACT
With the rapid development of information technology and mobile Internet, digital image, text, audio, video, and other cross-media data are growing explosively, which has changed people's way of life and work. In view of the issues of negative studying effectivity and challenging attention of college students in the modern-day piano instructing process, this paper puts forward the application of knowledge Atlas technology in piano teaching and constructs a multimodal knowledge Atlas of piano teaching based on deep neural network, so as to make piano teaching more intelligent and improve students' learning efficiency and learning interest. How to realize the semantic association understanding of cross-media data is the core problem of cross-media semantic analysis. First, this paper introduces the basic rules of ontology construction and the basic method of establishing general knowledge graph are introduced. Then, taking the piano teaching content as an example, natural language sentences can be expressed and stored with cross-media data using semantic network. The mathematical understanding is extracted in accordance to the herbal language processing technology, and the entities are fused in accordance to the frequent semantic similarity detection between extraordinary entities, so as to decrease the redundancy and repetition fee of entities and the complexity of the graph. The fused new knowledge is processed according to the quality evaluation rules, the qualified part is added to the knowledge base, and then the above steps are iterated to update the database. The great overall performance of piano instructing understanding graph mannequin primarily based on semantic network is validated through experiments.
PMID:35755737 | PMC:PMC9225848 | DOI:10.1155/2022/5499593
Neuro-semantic prediction of user decisions to contribute content to online social networks
Neural Comput Appl. 2022 Jun 22:1-22. doi: 10.1007/s00521-022-07307-0. Online ahead of print.
ABSTRACT
Understanding at microscopic level the generation of contents in an online social network (OSN) is highly desirable for an improved management of the OSN and the prevention of undesirable phenomena, such as online harassment. Content generation, i.e., the decision to post a contributed content in the OSN, can be modeled by neurophysiological approaches on the basis of unbiased semantic analysis of the contents already published in the OSN. This paper proposes a neuro-semantic model composed of (1) an extended leaky competing accumulator (ELCA) as the neural architecture implementing the user concurrent decision process to generate content in a conversation thread of a virtual community of practice, and (2) a semantic modeling based on the topic analysis carried out by a latent Dirichlet allocation (LDA) of both users and conversation threads. We use the similarity between the user and thread semantic representations to built up the model of the interest of the user in the thread contents as the stimulus to contribute content in the thread. The semantic interest of users in discussion threads are the external inputs for the ELCA, i.e., the external value assigned to each choice.. We demonstrate the approach on a dataset extracted from a real life web forum devoted to fans of tinkering with musical instruments and related devices. The neuro-semantic model achieves high performance predicting the content posting decisions (average F score 0.61) improving greatly over well known machine learning approaches, namely random forest and support vector machines (average F scores 0.19 and 0.21).
PMID:35756152 | PMC:PMC9214480 | DOI:10.1007/s00521-022-07307-0
Personalized Recommendations for Physical Activity e-Coaching (OntoRecoModel): Ontological Modeling
JMIR Med Inform. 2022 Jun 23;10(6):e33847. doi: 10.2196/33847.
ABSTRACT
BACKGROUND: Automatic e-coaching may motivate individuals to lead a healthy lifestyle with early health risk prediction, personalized recommendation generation, and goal evaluation. Multiple studies have reported on uninterrupted and automatic monitoring of behavioral aspects (such as sedentary time, amount, and type of physical activity); however, e-coaching and personalized feedback techniques are still in a nascent stage. Current intelligent coaching strategies are mostly based on the handcrafted string messages that rarely individualize to each user's needs, context, and preferences. Therefore, more realistic, flexible, practical, sophisticated, and engaging strategies are needed to model personalized recommendations.
OBJECTIVE: This study aims to design and develop an ontology to model personalized recommendation message intent, components (such as suggestion, feedback, argument, and follow-ups), and contents (such as spatial and temporal content and objects relevant to perform the recommended activities). A reasoning technique will help to discover implied knowledge from the proposed ontology. Furthermore, recommendation messages can be classified into different categories in the proposed ontology.
METHODS: The ontology was created using Protégé (version 5.5.0) open-source software. We used the Java-based Jena Framework (version 3.16) to build a semantic web application as a proof of concept, which included Resource Description Framework application programming interface, World Wide Web Consortium Web Ontology Language application programming interface, native tuple database, and SPARQL Protocol and Resource Description Framework Query Language query engine. The HermiT (version 1.4.3.x) ontology reasoner available in Protégé 5.x implemented the logical and structural consistency of the proposed ontology. To verify the proposed ontology model, we simulated data for 8 test cases. The personalized recommendation messages were generated based on the processing of personal activity data in combination with contextual weather data and personal preference data. The developed ontology was processed using a query engine against a rule base to generate personalized recommendations.
RESULTS: The proposed ontology was implemented in automatic activity coaching to generate and deliver meaningful, personalized lifestyle recommendations. The ontology can be visualized using OWLViz and OntoGraf. In addition, we developed an ontology verification module that behaves similar to a rule-based decision support system to analyze the generation and delivery of personalized recommendation messages following a logical structure.
CONCLUSIONS: This study led to the creation of a meaningful ontology to generate and model personalized recommendation messages for physical activity coaching.
PMID:35737439 | DOI:10.2196/33847
Transmission and Drug Resistance Characteristics of Human Immunodeficiency Virus-1 Strain Using Medical Information Data Retrieval System
Comput Math Methods Med. 2022 Jun 13;2022:2173339. doi: 10.1155/2022/2173339. eCollection 2022.
ABSTRACT
This study was aimed at exploring the transmission and drug resistance characteristics of acquired immunodeficiency syndrome (AIDS) caused by human immunodeficiency virus-1 (HIV-1). The query expansion algorithm based on Candecomp Parafac (CP) decomposition was adopted to construct a data information retrieval system for semantic web and tensor decomposition. In the latent variable model based on tensor decomposition, the three elements in the triples generated feature vectors to calculate the training samples. The HIV patient data set was selected to evaluate the performance of the system, and then, the HIV gene resistance of 213 patients was retrospectively analyzed based on the electronic medical records. 43 cases showed failure of ribonucleic acid drug resistance, the ART virological failure rate was 24.43% (43/213), and one case was not reported. There was 1 case of RNA hemolysis that could not be detected. There were 50 resistant cases of nonnucleotide reverse transcriptase inhibitors (NNRTI), accounting for 29.94% (50/167), and there were 17 resistant cases of nucleotide reverse transcriptase inhibitors (NRTI), accounting for 10.18% (17/167) of all mutation cases. Among the HIV-1 strains, 19 cases failed the detection of drug resistance sites in the integrase region, and mutations in the integrase region were significantly more than those in the protease region. There were 12 types of HIV-1 strains with drug-resistant mutations. The fusion technical scheme constructed in this study showed excellent performance in medical information retrieval. In this study, the characteristics of HIV-1 of AIDS patients were analyzed from different directions, and effective treatment was performed for patients, so as to provide reference for clinical diagnosis of AIDS patients.
PMID:35734773 | PMC:PMC9208953 | DOI:10.1155/2022/2173339
Encryption technique based on chaotic neural network space shift and color-theory-induced distortion
Sci Rep. 2022 Jun 21;12(1):10410. doi: 10.1038/s41598-022-14356-x.
ABSTRACT
Protecting information privacy is likely to promote trust in the digital world and increase its use. This trust may go a long way toward motivating a wider use of networks and the internet, making the vision of the semantic web and Internet of Things a reality. Many encryption techniques that purport to protect information against known attacks are available. However, since the security challenges are ever-growing, devising effective techniques that counter the emerging challenges seems a rational response to these challenges. This paper proffers an encryption technique with a unique computational model that inspires ideas from color theory and chaotic systems. This mix offers a novel computation model with effective operations that (1) highly confuse plaintext and (2) generate key-based enormously complicated codes to hide the resulting ciphertext. Experiments with the prototype implementation showed that the proposed technique is effective (passed rigorous NIST/ENT security tests) and fast.
PMID:35729209 | DOI:10.1038/s41598-022-14356-x
A new semantic resource responding to the principles of Open Science: The meat thesaurus as an IT tool for dialogue between sector actors
Meat Sci. 2022 May 20;192:108849. doi: 10.1016/j.meatsci.2022.108849. Online ahead of print.
ABSTRACT
Nowadays, it is important to make the results of scientific research accessible in a simple and understandable way according to the Open Science policy. This movement uses tools to enhance findability and interoperability of data. This paper describes the transformation of the meat dictionary published by the French Meat Academy as a book into a machine actionable and freely accessible terminological resource based on the SKOS standard format. This thesaurus contains 1567 concepts describing the meat production chain. This work was carried out by experts in semantic web, meat biology and meat vocabulary. This thesaurus can be used to index articles, journals and datasets, thus facilitating consultation; it can also be used to facilitate interoperability of the indexed datasets and provide contextual definitions for building ontologies, i.e. formal descriptions of knowledge for reasoning on data. The thesaurus can be useful to enrich other vocabularies with new knowledge, such as French specificities in terms of meat cuts or definitions.
PMID:35728340 | DOI:10.1016/j.meatsci.2022.108849
Systematic Analysis of Actively Transcribed Core Matrisome Genes Across Tissues and Cell Phenotypes
Matrix Biol. 2022 Jun 14:S0945-053X(22)00083-X. doi: 10.1016/j.matbio.2022.06.003. Online ahead of print.
ABSTRACT
The extracellular matrix (ECM) is a highly dynamic, well-organized acellular network of tissue-specific biomolecules, that can be divided into structural or core ECM proteins and ECM-associated proteins. The ECM serves as a blueprint for organ development and function and, when structurally altered through mutation, altered expression, or degradation, can lead to debilitating syndromes that often affect one tissue more than another. Cross-referencing the FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) and the defined catalog of core matrisome ECM (glyco)proteins, we conducted a comprehensive analysis of 511 different human samples to annotate the context-specific transcription of the individual components of the defined matrisome. Relative log expression normalized SSTAR cap analysis gene expression peak data files were downloaded from the FANTOM5 online database and filtered to exclude all cell lines and diseased tissues. Promoter-level expression values were categorized further into eight core tissue systems and three major ECM categories: proteoglycans, glycoproteins, and collagens. Hierarchical clustering and correlation analyses were conducted to identify complex relationships in promoter-driven gene expression activity. Integration of the core matrisome and curated FANTOM5 SSTAR data creates a unique tool that provides insight into the promoter-level expression of ECM-encoding genes in a tissue- and cell-specific manner. Unbiased clustering of cap analysis gene expression peak data reveals unique ECM signatures within defined tissue systems. Correlation analysis among tissue systems exposes both positive and negative correlation of ECM promoters with varying levels of significance. This tool can be used to provide new insight into the relationships between ECM components and tissues and can inform future research on the ECM in human disease and development. We invite the matrix biology community to continue to explore and discuss this dataset as part of a larger and continuing conversation about the human ECM. An interactive web tool can be found at matrixpromoterome.github.io along with additional resources that can be found at dx.doi.org/10.6084/m9.figshare.19794481 (figures) and https://figshare.com/s/e18ecbc3ae5aaf919b78 (python notebook).
PMID:35714875 | DOI:10.1016/j.matbio.2022.06.003
Examining the intersection of child protection and public housing: development, health and justice outcomes using linked administrative data
BMJ Open. 2022 Jun 10;12(6):e057284. doi: 10.1136/bmjopen-2021-057284.
ABSTRACT
OBJECTIVE: We described development, health and justice system outcomes for children in contact with child protection and public housing.
DESIGN: Descriptive analysis of outcomes for children known to child protection who also had contact with public housing drawn from the South Australian (SA) Better Evidence Better Outcomes Linked Data (BEBOLD) platform.
SETTING: The BEBOLD platform holds linked administrative records collected by government agencies for whole-population successive birth cohorts in SA beginning in 1999.
PARTICIPANTS: This study included data from birth registrations, perinatal, child protection, public housing, hospital, emergency department, early education and youth justice for all SA children born 1999-2013 and followed until 2016. The base population notified at least once to child protection was n=67 454.
PRIMARY OUTCOME MEASURE: Contact with the public housing system.
SECONDARY OUTCOME MEASURES: Hospitalisations and emergency department presentations before age 5, and early education at age 5, and youth justice contact before age 17.
RESULTS: More than 60% of children with at least one notification to child protection had contact with public housing, and 60.2% of those known to both systems were known to housing first. Children known to both systems experienced more emergency department and hospitalisation contacts, greater developmental vulnerability and were about six times more likely to have youth justice system contact.
CONCLUSIONS: There is substantial overlap between involvement with child protection and public housing in SA. Those children are more likely to face a life trajectory characterised by greater contact with the health system, greater early life developmental vulnerability and greater contact with the criminal justice system. Ensuring the highest quality of supportive early life infrastructure for families in public housing may contribute to prevention of contact with child protection and better life trajectories for children.
PMID:35688602 | DOI:10.1136/bmjopen-2021-057284
Access to and Quality of Neighbourhood Public Open Space and Children's Mental Health Outcomes: Evidence from Population Linked Data across Eight Australian Capital Cities
Int J Environ Res Public Health. 2022 Jun 1;19(11):6780. doi: 10.3390/ijerph19116780.
ABSTRACT
Neighbourhood-level interventions offer a promising opportunity to promote child mental health at a population level; however, neighbourhood effects are still regarded as a 'black box' and a better understanding of the specific design elements, such as public open space, is needed to inform actionable policy interventions.
METHODS: This study leveraged data from a population linked dataset (Australian Early Development Census-Built Environment) combining information from a national census of children's developmental outcomes with individualised geospatial data. Associations between access to (within 400 m and 800 m from home), and quality of, public open space and child mental health outcomes across eight capital cities were estimated using multilevel logistic regression models, adjusting for demographic and contextual factors. Access was defined based on proximity of public open space to children's home addresses, within distance thresholds (400 m, 800 m) measured along the road network. Effect modification was tested across maternal education groups.
RESULTS: Across the eight capital cities, inequities in access to child friendly public open spaces were observed across maternal education groups and neighbourhood disadvantage quintiles. Children with access to any type of public open space within 800 m of home had lower odds of demonstrating difficulties and higher odds of competence. Children with access to child friendly public open spaces within 800 m of home had the highest likelihood of demonstrating competence.
CONCLUSION: Improving access to neighbourhood public open space appears to be a promising strategy for preventing mental health difficulties and promoting competence in early childhood. Action is needed to redress socio-spatial inequities in access to child friendly public open space.
PMID:35682362 | PMC:PMC9180559 | DOI:10.3390/ijerph19116780
Supporting Smart Home Scenarios Using OWL and SWRL Rules
Sensors (Basel). 2022 May 29;22(11):4131. doi: 10.3390/s22114131.
ABSTRACT
Despite the pervasiveness of IoT domotic devices in the home automation landscape, their potential is still quite under-exploited due to the high heterogeneity and the scarce expressivity of the most commonly adopted scenario programming paradigms. The aim of this study is to show that Semantic Web technologies constitute a viable solution to tackle not only the interoperability issues, but also the overall programming complexity of modern IoT home automation scenarios. For this purpose, we developed a knowledge-based home automation system in which scenarios are the result of logical inferences over the IoT sensors data combined with formalised knowledge. In particular, we describe how the SWRL language can be employed to overcome the limitations of the well-known trigger-action paradigm. Through various experiments in three distinct scenarios, we demonstrated the feasibility of the proposed approach and its applicability in a standardised and validated context such as SAREF.
PMID:35684752 | DOI:10.3390/s22114131
Toward Improved Treatment and Empowerment of Individuals With Parkinson Disease: Design and Evaluation of an Internet of Things System
JMIR Form Res. 2022 Jun 9;6(6):e31485. doi: 10.2196/31485.
ABSTRACT
BACKGROUND: Parkinson disease (PD) is a chronic degenerative disorder that causes progressive neurological deterioration with profound effects on the affected individual's quality of life. Therefore, there is an urgent need to improve patient empowerment and clinical decision support in PD care. Home-based disease monitoring is an emerging information technology with the potential to transform the care of patients with chronic illnesses. Its acceptance and role in PD care need to be elucidated both among patients and caregivers.
OBJECTIVE: Our main objective was to develop a novel home-based monitoring system (named EMPARK) with patient and clinician interface to improve patient empowerment and clinical care in PD.
METHODS: We used elements of design science research and user-centered design for requirement elicitation and subsequent information and communications technology (ICT) development. Functionalities of the interfaces were the subject of user-centric multistep evaluation complemented by semantic analysis of the recorded end-user reactions. The ICT structure of EMPARK was evaluated using the ICT for patient empowerment model.
RESULTS: Software and hardware system architecture for the collection and calculation of relevant parameters of disease management via home monitoring were established. Here, we describe the patient interface and the functional characteristics and evaluation of a novel clinician interface. In accordance with our previous findings with regard to the patient interface, our current results indicate an overall high utility and user acceptance of the clinician interface. Special characteristics of EMPARK in key areas of interest emerged from end-user evaluations, with clear potential for future system development and deployment in daily clinical practice. Evaluation through the principles of ICT for patient empowerment model, along with prior findings from patient interface evaluation, suggests that EMPARK has the potential to empower patients with PD.
CONCLUSIONS: The EMPARK system is a novel home monitoring system for providing patients with PD and the care team with feedback on longitudinal disease activities. User-centric development and evaluation of the system indicated high user acceptance and usability. The EMPARK infrastructure would empower patients and could be used for future applications in daily care and research.
PMID:35679097 | DOI:10.2196/31485
Translating the Observational Medical Outcomes Partnership - Common Data Model (OMOP-CDM) Electronic Health Records to an OWL Ontology
Stud Health Technol Inform. 2022 Jun 6;290:76-80. doi: 10.3233/SHTI220035.
ABSTRACT
The heterogeneity of electronic health records model is a major problem: it is necessary to gather data from various models for clinical research, but also for clinical decision support. The Observational Medical Outcomes Partnership - Common Data Model (OMOP-CDM) has emerged as a standard model for structuring health records populated from various other sources. This model is proposed as a relational database schema. However, in the field of decision support, formal ontologies are commonly used. In this paper, we propose a translation of OMOP-CDM into an ontology, and we explore the utility of the semantic web for structuring EHR in a clinical decision support perspective, and the use of the SPARQL language for querying health records. The resulting ontology is available online.
PMID:35672974 | DOI:10.3233/SHTI220035
Improving Findability of Digital Assets in Research Data Repositories Using the W3C DCAT Vocabulary
Stud Health Technol Inform. 2022 Jun 6;290:61-65. doi: 10.3233/SHTI220032.
ABSTRACT
Research data management requires stable, trustworthy repositories to safeguard scientific research results. In this context, rich markup with metadata is crucial for the discoverability and interpretability of the relevant resources. SEEK is a web-based software to manage all important artifacts of a research project, including project structures, involved actors, documents and datasets. SEEK is organized along the ISA model (Investigation - Study - Assay). It offers several machine-readable serializations, including JSON and RDF. In this paper, we extend the power of RDF serialization by leveraging the W3C Data Catalog Vocabulary (DCAT). DCAT was specifically designed to improve interoperability between digital assets on the Web and enables cross-domain markup. By using community-consented gold standard vocabularies and a formal knowledge description language, findability and interoperability according to the FAIR principles are significantly improved.
PMID:35672971 | DOI:10.3233/SHTI220032
Synthesizing evidence from clinical trials with dynamic interactive argument trees
J Biomed Semantics. 2022 Jun 3;13(1):16. doi: 10.1186/s13326-022-00270-8.
ABSTRACT
BACKGROUND: Evidence-based medicine propagates that medical/clinical decisions are made by taking into account high-quality evidence, most notably in the form of randomized clinical trials. Evidence-based decision-making requires aggregating the evidence available in multiple trials to reach -by means of systematic reviews- a conclusive recommendation on which treatment is best suited for a given patient population. However, it is challenging to produce systematic reviews to keep up with the ever-growing number of published clinical trials. Therefore, new computational approaches are necessary to support the creation of systematic reviews that include the most up-to-date evidence.We propose a method to synthesize the evidence available in clinical trials in an ad-hoc and on-demand manner by automatically arranging such evidence in the form of a hierarchical argument that recommends a therapy as being superior to some other therapy along a number of key dimensions corresponding to the clinical endpoints of interest. The method has also been implemented as a web tool that allows users to explore the effects of excluding different points of evidence, and indicating relative preferences on the endpoints.
RESULTS: Through two use cases, our method was shown to be able to generate conclusions similar to the ones of published systematic reviews. To evaluate our method implemented as a web tool, we carried out a survey and usability analysis with medical professionals. The results show that the tool was perceived as being valuable, acknowledging its potential to inform clinical decision-making and to complement the information from existing medical guidelines.
CONCLUSIONS: The method presented is a simple but yet effective argumentation-based method that contributes to support the synthesis of clinical trial evidence. A current limitation of the method is that it relies on a manually populated knowledge base. This problem could be alleviated by deploying natural language processing methods to extract the relevant information from publications.
PMID:35659056 | DOI:10.1186/s13326-022-00270-8
Research on Quantitative Model of Brand Recognition Based on Sentiment Analysis of Big Data
Front Psychol. 2022 May 12;13:915443. doi: 10.3389/fpsyg.2022.915443. eCollection 2022.
ABSTRACT
This paper takes laptops as an example to carry out research on quantitative model of brand recognition based on sentiment analysis of big data. The basic idea is to use web crawler technology to obtain the most authentic and direct information of different laptop brands from first-line consumers from public spaces such as buyer reviews of major e-commerce platforms, including review time, text reviews, satisfaction ratings and relevant user information, etc., and then analyzes consumers' sentimental tendencies and recognition status of the product brands. This study extracted a total of 437,815 user reviews of laptops from e-commerce platforms from January 1, 2019 to December 31, 2021, and performed data preprocessing on the obtained review data, followed by sentiment dictionary construction, attribute expansion, text quantification and algorithm evaluation. This paper analyzed the information receiving and processing hierarchy of the quantitative model of brand recognition, discussed the interactive relationship between brand recognition and consumer sentiment, discussed the brand recognition bias, style and demand in the context of big data, and performed the sentiment statistics and dimension analysis in the quantitative model of brand recognition. The study results show that the quantitative model of brand recognition based on sentiment analysis of big data can transform and map the keywords in text to word vectors in the high-dimensional semantic space by performing unsupervised machine learning on the text based on artificial neural network computer bionic metaphors; the model can accumulate each brand-related buyer review in the corresponding brand recognition dimension, so as to obtain the value of each product in each dimension of brand recognition; finally, the model will add the values of each dimension of brand recognition, that is, obtain the relevant value of the sum of each brand recognition. The results of this paper may provide a reference for further research on the quantitative model of brand recognition based on sentiment analysis of big data.
PMID:35645872 | PMC:PMC9133927 | DOI:10.3389/fpsyg.2022.915443
Assessing the Need for Semantic Data Integration for Surgical Biobanks-A Knowledge Representation Perspective
J Pers Med. 2022 May 7;12(5):757. doi: 10.3390/jpm12050757.
ABSTRACT
To improve patient outcomes after trauma, the need to decrypt the post-traumatic immune response has been identified. One prerequisite to drive advancement in understanding that domain is the implementation of surgical biobanks. This paper focuses on the outcomes of patients with one of two diagnoses: post-traumatic arthritis and osteomyelitis. In creating surgical biobanks, currently, many obstacles must be overcome. Roadblocks exist around scoping of data that is to be collected, and the semantic integration of these data. In this paper, the generic component model and the Semantic Web technology stack are used to solve issues related to data integration. The results are twofold: (a) a scoping analysis of data and the ontologies required to harmonize and integrate it, and (b) resolution of common data integration issues in integrating data relevant to trauma surgery.
PMID:35629179 | DOI:10.3390/jpm12050757