Drug Repositioning

Czy krople na jaskrę zrewolucjonizują leczenie łysienia androgenowego? O repozycjonowaniu leku, którego efekt uboczny stał się pożądanym skutkiem terapii

Wed, 2025-01-08 06:00

Postepy Biochem. 2024 Dec 2;70(4):438-446. doi: 10.18388/pb.2021_577.

ABSTRACT

Prostaglandyny są hormonami występującymi niemal we wszystkich ssaczych tkankach. Jako cząsteczki sygnałowe odgrywają one kluczową rolę w regulacji wielu procesów fizjologicznych, m. in. cyklu wzrostu włosa. W artykule opisano historię odkrycia prostaglandyn, w tym prace profesora Ryszarda Gryglewskiego - odkrywcy prostacykliny. Szczególną uwagę zwrócono na syntetyczny analog prostaglandyny F2α - latanoprost. Jest to lek wskazany w leczeniu jaskry, którego działaniem ubocznym jest nadmierny wzrost rzęs. Jako prolek, latanoprost ulega przekształceniu do aktywnego metabolitu - kwasu latanoprostowego. Dzięki ostatnim badaniom wiadomo, że kwas latanoprostowy ma szanse stać się skuteczną alternatywą dla minoksydylu i finasterydu - jedynych leków zarejestrowanych obecnie do leczenia łysienia androgenowego. Wprowadzenie na rynek leków przeciwko łysieniu zawierających pochodne prostaglandyn, w tym kwas latanoprostowy będzie procesem znacznie szybszym w porównaniu do tradycyjnej ścieżki rozwoju produktu, opartego o nowy związek chemiczny.

PMID:39772319 | DOI:10.18388/pb.2021_577

Categories: Literature Watch

Discovery of Non-Peptide GLP-1 Positive Allosteric Modulators from Natural Products: Virtual Screening, Molecular Dynamics, ADMET Profiling, Repurposing, and Chemical Scaffolds Identification

Wed, 2025-01-08 06:00

Pharmaceutics. 2024 Dec 17;16(12):1607. doi: 10.3390/pharmaceutics16121607.

ABSTRACT

Background/Objectives: Glucagon-like peptide-1 (GLP-1) receptor is currently one of the most explored targets exploited for the management of diabetes and obesity, with many aspects of its mechanisms behind cardiovascular protection yet to be fully elucidated. Research dedicated towards the development of oral GLP-1 therapy and non-peptide ligands with broader clinical applications is crucial towards unveiling the full therapeutic capacity of this potent class of medicines. Methods: This study describes the virtual screening of a natural product database consisting of 695,133 compounds for positive GLP-1 allosteric modulation. The database, obtained from the Coconut website, was filtered according to a set of physicochemical descriptors, then was shape screened against the crystal ligand conformation. This filtered database consisting of 26,325 compounds was used for virtual screening against the GLP-1 allosteric site. Results: The results identified ten best hits with the XP score ranging from -9.6 to -7.6 and MM-GBSA scores ranging from -50.8 to -32.4 and another 58 hits from docked pose filter and a second round of XP docking and MM-GBSA calculation followed by molecular dynamics. The analysis of results identified hits from various natural products (NPs) classes, to whom attributed antidiabetic and anti-obesity effects have been previously reported. The results also pointed to β-lactam antibiotics that may be evaluated in drug repurposing studies for off-target effects. The calculated ADMET properties for those hits revealed suitable profiles for further development in terms of bioavailability and toxicity. Conclusions: The current study identified several NPs as potential GLP-1 positive allosteric modulators and revealed common structural scaffolds including peptidomimetics, lactams, coumarins, and sulfonamides with peptidomimetics being the most prominent especially in indole and coumarin cores.

PMID:39771585 | DOI:10.3390/pharmaceutics16121607

Categories: Literature Watch

Antiproliferative and Morphological Analysis Triggered by Drugs Contained in the Medicines for Malaria Venture COVID-Box Against <em>Toxoplasma gondii</em> Tachyzoites

Wed, 2025-01-08 06:00

Microorganisms. 2024 Dec 16;12(12):2602. doi: 10.3390/microorganisms12122602.

ABSTRACT

Toxoplasma gondii is a protozoan, and the etiologic agent of toxoplasmosis, a disease that causes high mortality in immunocompromised individuals and newborns. Despite the medical importance of toxoplasmosis, few drugs, which are associated with side effects and parasite resistance, are available for its treatment. Here, we show a screening of molecules present in COVID-Box to discover new hits with anti-T. gondii activity. COVID-Box contains 160 molecules with known or predicted activity against SARS-CoV-2. Our analysis selected 23 COVID-Box molecules that can inhibit the tachyzoite forms of the RH strain of T. gondii in vitro by more than 70% at 1 µM after seven days of treatment. The inhibitory curves showed that most of these molecules inhibited the proliferation of tachyzoites with IC50 values below 0.80 µM; Cycloheximide and (-)-anisomycin were the most active drugs, with IC50 values of 0.02 μM. Cell viability assays showed that the compounds are not toxic at active concentrations, and most are highly selective for parasites. Overall, all 23 compounds were selective, and for two of them (apilimod and midostaurin), this is the first report of activity against T. gondii. To better understand the effect of the drugs, we analyzed the effect of nine of them on the ultrastructure of T. gondii using transmission electron microscopy. After treatment with the selected drugs, the main changes observed in parasite morphology were the arrestment of cell division and organelle alterations.

PMID:39770804 | DOI:10.3390/microorganisms12122602

Categories: Literature Watch

Diverse Applications of the Anti-Diabetic Drug Metformin in Treating Human Disease

Wed, 2025-01-08 06:00

Pharmaceuticals (Basel). 2024 Nov 27;17(12):1601. doi: 10.3390/ph17121601.

ABSTRACT

Metformin is a commonly used drug for treating type 2 diabetes. Metformin is an inexpensive drug with low/no side effects and is well tolerated in human patients of different ages. Recent therapeutic strategies for human disease have considered the benefits of drug repurposing. This includes the use of the anti-diabetic drug metformin. Accordingly, the anti-inflammatory, anti-cancer, anti-viral, neuroprotective, and cardioprotective potentials of metformin have deemed it a suitable candidate for treating a plethora of human diseases. As results from preclinical studies using cellular and animal model systems appear promising, clinical trials with metformin in the context of non-diabetes-related illnesses have been started. Here, we aim to provide a comprehensive overview of the therapeutic potential of metformin in different animal models of human disease and its suggested relationship to epigenetics and ailments with epigenetic components.

PMID:39770443 | DOI:10.3390/ph17121601

Categories: Literature Watch

Kanamycin and G-Quadruplexes: An Exploration of Binding Interactions

Wed, 2025-01-08 06:00

Molecules. 2024 Dec 16;29(24):5932. doi: 10.3390/molecules29245932.

ABSTRACT

G-quadruplexes (G4s) are distinctive four-stranded nucleic acid structures formed by guanine-rich sequences, making them attractive targets for drug repurposing efforts. Modulating their stability and function holds promise for treating diseases like cancer. To identify potential drug candidates capable of interacting with these complex DNA formations, docking studies and molecular dynamics (MDs) simulations were conducted. Our analysis revealed kanamycin's ability to bind to various G4 structures, offering valuable insights into its potential as a modulator of G4 activity. Kanamycin exhibited favorable interactions with both parallel and hybrid G4 topologies in human structures, suggesting a broader mechanism of action for aminoglycosides. These findings may also shed light on aminoglycoside-associated toxicities, indicating that their effects might extend to binding non-ribosomal RNA structures. In summary, this research highlights kanamycin's potential as a promising tool for influencing G4 dynamics, paving the way for innovative therapeutic strategies targeting G4-related pathways.

PMID:39770021 | DOI:10.3390/molecules29245932

Categories: Literature Watch

Proteasome Inhibitors Induce Apoptosis in Ex Vivo Cells of T-Cell Prolymphocytic Leukemia

Wed, 2025-01-08 06:00

Int J Mol Sci. 2024 Dec 18;25(24):13573. doi: 10.3390/ijms252413573.

ABSTRACT

Finding an effective treatment for T-PLL patients remains a significant challenge. Alemtuzumab, currently the gold standard, is insufficient in managing the aggressiveness of the disease in the long term. Consequently, numerous efforts are underway to address this unmet clinical need. The rarity of the disease limits the ability to conduct robust clinical trials, making in silico, ex vivo, and in vivo drug screenings essential for designing new therapeutic strategies for T-PLL. We conducted a drug repurposing analysis based on T-PLL gene expression data and identified proteasome inhibitors (PIs) as a promising new class of compounds capable of reversing the T-PLL phenotype. Treatment of ex vivo T-PLL cells with Bortezomib and Carfilzomib, two PI compounds, supported this hypothesis by demonstrating increased apoptosis in leukemic cells. The current lack of a suitable in vitro model for the study of T-PLL prompted us to perform similar experiments in the SUP-T11 cell line, validating its potential by showing an increased apoptotic rate. Taken together, these findings open new avenues for investigating the molecular mechanisms underlying the efficacy of PI in T-PLL and expand the spectrum of potential therapeutic strategies for this highly aggressive disease.

PMID:39769335 | DOI:10.3390/ijms252413573

Categories: Literature Watch

Repurposing Historic Drugs for Neutrophil-Mediated Inflammation in Skin Disorders

Wed, 2025-01-08 06:00

Biomolecules. 2024 Nov 27;14(12):1515. doi: 10.3390/biom14121515.

ABSTRACT

Neutrophil-mediated inflammation is a key feature of immune-mediated chronic skin disorders, but the mechanistic understanding of neutrophil involvement in these conditions remains incomplete. Dapsone, colchicine, and tetracyclines are established drugs within the dermatologist's therapeutic armamentarium that are credited with potent anti-neutrophilic effects. Anti-neutrophilic drugs have established themselves as versatile agents in the treatment of a wide range of dermatological conditions. Some of these agents are approved for the management of specific dermatologic conditions, but most of their current uses are off-label and only supported by isolated reports or case series. Their anti-inflammatory and immunomodulatory properties make them particularly valuable in managing auto-immune bullous diseases, neutrophilic dermatoses, eosinophilic dermatoses, interface dermatitis, and granulomatous diseases that are the focus of this review. By inhibiting inflammatory pathways, reducing cytokine production, and modulating immune responses, they contribute significantly to the treatment and management of these complex skin conditions. Their use continues to evolve as our understanding of these diseases deepens, and they remain a cornerstone of dermatological therapy.

PMID:39766222 | DOI:10.3390/biom14121515

Categories: Literature Watch

Repurposed Drugs and Plant-Derived Natural Products as Potential Host-Directed Therapeutic Candidates for Tuberculosis

Wed, 2025-01-08 06:00

Biomolecules. 2024 Nov 24;14(12):1497. doi: 10.3390/biom14121497.

ABSTRACT

Tuberculosis (TB) is one of the leading causes of death due to infectious disease. It is a treatable disease; however, conventional treatment requires a lengthy treatment regimen with severe side effects, resulting in poor compliance among TB patients. Intermittent drug use, the non-compliance of patients, and prescription errors, among other factors, have led to the emergence of multidrug-resistant TB, while the mismanagement of multidrug-resistant TB (MDR-TB) has eventually led to the development of extensively drug-resistant tuberculosis (XDR-TB). Thus, there is an urgent need for new drug development, but due to the enormous expenses and time required (up to 20 years) for new drug research and development, new therapeutic approaches to TB are required. Host-directed therapies (HDT) could be a most attractive strategy, as they target the host defense processes instead of the microbe and thereby may prevent the alarming rise of MDR- and XDR-TB. This paper reviews the progress in HDT for the treatment of TB using repurposed drugs which have been investigated in clinical trials (completed or ongoing) and plant-derived natural products that are in clinical or preclinical trial stages. Additionally, this review describes the existing challenges to the development and future research directions in the implementation of HDT.

PMID:39766204 | DOI:10.3390/biom14121497

Categories: Literature Watch

H1 Antihistamines-Promising Candidates for Repurposing in the Context of the Development of New Therapeutic Approaches to Cancer Treatment

Wed, 2025-01-08 06:00

Cancers (Basel). 2024 Dec 20;16(24):4253. doi: 10.3390/cancers16244253.

ABSTRACT

Despite significant progress in the field of clinical oncology in terms of diagnostic and treatment methods, the results of anticancer therapy are still not fully satisfactory, especially due to limited response and high toxicity. This has forced the need for further research to finding alternative ways to improve success rates in oncological treatment. A good solution to this problem in the context of rapidly obtaining an effective drug that works on multiple levels of cancer and is also safe is the global strategy of repurposing an existing drug. Research into other applications of an existing drug enables a precise assessment of its possible mechanisms of action and, consequently, the broadening of therapeutic indications. This strategy is also supported by the fact that most non-oncological drugs have pleiotropic effects, and most of the diseases for which they were originally intended are multifactorial, which in turn is a very desirable phenomenon due to the heterogeneous and multifaceted biology of cancer. In this review, we will mainly focus on the anticancer potential of H1 antihistamines, especially the new generation that were not originally intended for cancer therapy, to highlight the relevant signaling pathways and discuss the properties of these agents for their judicious use based on the characteristic features of cancer.

PMID:39766152 | DOI:10.3390/cancers16244253

Categories: Literature Watch

Draw+: network-based computational drug repositioning with attention walking and noise filtering

Tue, 2025-01-07 06:00

Health Inf Sci Syst. 2025 Jan 5;13(1):14. doi: 10.1007/s13755-024-00326-2. eCollection 2025 Dec.

ABSTRACT

PURPOSE: Drug repositioning, a strategy that repurposes already-approved drugs for novel therapeutic applications, provides a faster and more cost-effective alternative to traditional drug discovery. Network-based models have been adopted by many computational methodologies, especially those that use graph neural networks to predict drug-disease associations. However, these techniques frequently overlook the quality of the input network, which is a critical factor for achieving accurate predictions.

METHODS: We present a novel network-based framework for drug repositioning, named DRAW+, which incorporates noise filtering and feature extraction using graph neural networks and attention mechanisms. The proposed model first constructs a heterogeneous network that integrates the drug-disease association network with the similarity networks of drugs and diseases, which are upgraded through reduced-rank singular value decomposition. Next, a subgraph surrounding the targeted drug-disease node pair is extracted, allowing the model to focus on local structures. Graph neural networks are then applied to extract structural representation, followed by attention walking to capture key features of the subgraph. Finally, a multi-layer perceptron classifies the subgraph as positive or negative, which indicates the presence of the link between the target node pair.

RESULTS: Experimental validation across three benchmark datasets showed that DRAW+ outperformed seven state-of-the-art methods, achieving the highest average AUROC and AUPRC, 0.963 and 0.564, respectively. Moreover, DRAW+ demonstrated its robustness by achieving the best performance across two additional datasets, further confirming its generalizability and effectiveness in diverse settings.

CONCLUSIONS: The proposed network-based computational approach, DRAW+, demonstrates exceptional accuracy and robustness, confirming its effectiveness in drug repositioning tasks.

PMID:39764174 | PMC:PMC11700073 | DOI:10.1007/s13755-024-00326-2

Categories: Literature Watch

Strategies for robust, accurate, and generalizable benchmarking of drug discovery platforms

Tue, 2025-01-07 06:00

bioRxiv [Preprint]. 2024 Dec 16:2024.12.10.627863. doi: 10.1101/2024.12.10.627863.

ABSTRACT

Benchmarking is an important step in the improvement, assessment, and comparison of the performance of drug discovery platforms and technologies. We revised the existing benchmarking protocols in our Computational Analysis of Novel Drug Opportunities (CANDO) multiscale therapeutic discovery platform to improve utility and performance. We optimized multiple parameters used in drug candidate prediction and assessment with these updated benchmarking protocols. CANDO ranked 7.4% of known drugs in the top 10 compounds for their respective diseases/indications based on drug-indication associations/mappings obtained from the Comparative Toxicogenomics Database (CTD) using these optimized parameters. This increased to 12.1% when drug-indication mappings were obtained from the Therapeutic Targets Database. Performance on an indication was weakly correlated (Spearman correlation coefficient > 0.3) with indication size (number of drugs associated with an indication) and moderately correlated (correlation coefficient > 0.5) with compound chemical similarity. There was also moderate correlation between our new and original benchmarking protocols when assessing performance per indication using each protocol. Benchmarking results were also dependent on the source of the drug-indication mapping used: a higher proportion of indication-associated drugs were recalled in the top 100 compounds when using the Therapeutic Targets Database (TTD), which only includes FDA-approved drug-indication associations (in contrast to the CTD, which includes associations drawn from the literature). We also created compbench, a publicly available head-to-head benchmarking protocol that allows consistent assessment and comparison of different drug discovery platforms. Using this protocol, we compared two pipelines for drug repurposing within CANDO; our primary pipeline outperformed another similarity-based pipeline still in development that clusters signatures based on their associated Gene Ontology terms. Our study sets a precedent for the complete, comprehensive, and comparable benchmarking of drug discovery platforms, resulting in more accurate drug candidate predictions.

PMID:39764006 | PMC:PMC11702551 | DOI:10.1101/2024.12.10.627863

Categories: Literature Watch

Metabolic adaptation of myeloid cells in the glioblastoma microenvironment

Tue, 2025-01-07 06:00

Front Immunol. 2024 Dec 23;15:1431112. doi: 10.3389/fimmu.2024.1431112. eCollection 2024.

ABSTRACT

In recent decades, immunometabolism in cancers has emerged as an interesting target for treatment development. Indeed, the tumor microenvironment (TME) unique characteristics such as hypoxia and limitation of nutrients availability lead to a switch in metabolic pathways in both tumor and TME cells in order to support their adaptation and grow. Glioblastoma (GBM), the most frequent and aggressive primary brain tumor in adults, has been extensively studied in multiple aspects regarding its immune population, but research focused on immunometabolism remains limited. Here, we provide an overview of immunometabolism adaptation of myeloid cells in cancers with a specific focus on GBM and other brain tumors, before describing current therapeutic strategies targeting metabolic pathways. The main myeloid cells composing the GBM TME include tumor-associated macrophages (TAMs), which comprise both peripheral macrophages and local microglia, as well as myeloid-derived suppressor cells. The metabolic pathways involved in myeloid cell remodeling encompass the tricarboxylic acid cycle (TCA cycle), the lipid, glucose and amino acid metabolism and hypoxia. Developing treatments that target these metabolic pathways in tumor growth and its TME is a promising and increasing field. It includes both drug-repurposing and the development of innovative metabolic therapies. We finally provide an overview of all clinical trials in neuro-oncology involving treatments modifying cell metabolism and provide the preclinical rationale for both drugs already evaluated within clinical trials and potential candidates for future trials.

PMID:39763643 | PMC:PMC11700814 | DOI:10.3389/fimmu.2024.1431112

Categories: Literature Watch

Two-Step Transfer Learning Improves Deep Learning-Based Drug Response Prediction in Small Datasets: A Case Study of Glioblastoma

Tue, 2025-01-07 06:00

Bioinform Biol Insights. 2025 Jan 3;19:11779322241301507. doi: 10.1177/11779322241301507. eCollection 2025.

ABSTRACT

While deep learning (DL) is used in patients' outcome predictions, the insufficiency of patient samples limits the accuracy. In this study, we investigated how transfer learning (TL) alleviates the small sample size problem. A 2-step TL framework was constructed for a difficult task: predicting the response of the drug temozolomide (TMZ) in glioblastoma (GBM) cell cultures. The GBM is aggressive, and most patients do not benefit from the only approved chemotherapeutic agent TMZ. O6-methylguanine-DNA methyltransferase (MGMT) promoter methylation status is the only biomarker for TMZ responsiveness but has shown limited predictive power. The 2-step TL framework was built on 3 datasets: (1) the subset of the Genomics of Drug Sensitivity in Cancer (GDSC) dataset, including miscellaneous cell cultures treated by TMZ, cyclophosphamide, bortezomib, and oxaliplatin, as the source dataset; (2) the Human Glioblastoma Cell Culture (HGCC) dataset, for fine-tuning; and (3) a small target dataset GSE232173, for validation. The latter two included specifically TMZ-treated GBM cell cultures. The DL models were pretrained on the cell cultures treated by each of the 4 drugs from GDSC, respectively. Then, the DL models were refined on HGCC, where the best source drug was identified. Finally, the DL model was validated on GSE232173. Using 2-step TL with pretraining on oxaliplatin was not only superior to those without TL and with 1-step TL but also better than 3 benchmark methods, including MGMT. The oxaliplatin-based TL improved the performance probably by increasing the weights of cell cycle-related genes, which relates to the TMZ response processes. Our findings support the potential of oxaliplatin being an alternative therapy for patients with GBM and TL facilitating drug repurposing research. We recommend that following our methodology, using mixed cancers and a related drug as the source and then fine-tuning the model with the target cancer and the target drug will enhance drug response prediction.

PMID:39763506 | PMC:PMC11700395 | DOI:10.1177/11779322241301507

Categories: Literature Watch

Semisupervised Contrastive Learning for Bioactivity Prediction Using Cell Painting Image Data

Mon, 2025-01-06 06:00

J Chem Inf Model. 2025 Jan 6. doi: 10.1021/acs.jcim.4c00835. Online ahead of print.

ABSTRACT

Morphological profiling has recently demonstrated remarkable potential for identifying the biological activities of small molecules. Alongside the fully supervised and self-supervised machine learning methods recently proposed for bioactivity prediction from Cell Painting image data, we introduce here a semisupervised contrastive (SemiSupCon) learning approach. This approach combines the strengths of using biological annotations in supervised contrastive learning and leveraging large unannotated image data sets with self-supervised contrastive learning. SemiSupCon enhances downstream prediction performance of classifying MeSH pharmacological classifications from PubChem, as well as mode of action and biological target annotations from the Drug Repurposing Hub across two publicly available Cell Painting data sets. Notably, our approach has effectively predicted the biological activities of several unannotated compounds, and these findings were validated through literature searches. This demonstrates that our approach can potentially expedite the exploration of biological activity based on Cell Painting image data with minimal human intervention.

PMID:39761993 | DOI:10.1021/acs.jcim.4c00835

Categories: Literature Watch

Repurposing of Metformin to Improve Survival Outcomes in Patients With Upper Tract Urothelial Carcinoma

Mon, 2025-01-06 06:00

Cancer Med. 2025 Jan;14(1):e70567. doi: 10.1002/cam4.70567.

ABSTRACT

PURPOSE: Upper tract urothelial carcinoma (UTUC) presents a higher incidence rate in Taiwan compared to Western societies. The aim of this study is to investigate the potential of metformin in improving survival outcomes for patients with UTUC in Taiwan.

MATERIAL AND METHODS: This retrospective study included 940 patients with UTUC and type 2 diabetes from the Taiwan UTUC Collaboration Group, spanning 21 hospitals from July 1988 to September 2023. Patients were divided into two groups: those treated with metformin (n = 215) and those without metformin treatment (n = 725). Parameters analyzed included age, BMI, renal function, tumor grade and location, and pathological staging. Oncological outcomes measured were overall survival (OS), cancer-specific survival (CSS), and bladder recurrence-free survival (BRFS). Statistical analysis involved the use of Student's t-test, Mann-Whitney test, Chi-squared test, Fisher's exact test, and Cox proportional hazard regression.

RESULTS: Significant differences were observed between the two groups in BMI, preoperative creatinine, eGFR, tumor location, tumor laterality, tumor size, and pathological grade and T stage. Patients treated with metformin exhibited a lower risk of CSS (HR = 0.619; p = 0.018) and improved OS (HR = 0.713; p = 0.024), although no significant association was found with BRFS (HR = 1.034; p = 0.791). The protective effect of metformin on OS was particularly significant in patients with advanced T stage, metastasis, and high-grade tumors.

CONCLUSION: The study suggests that metformin use in UTUC patients with diabetes is associated with improved OS and CSS but not BRFS. The underlying mechanisms warrant further investigation. Repurposing metformin, a well-established and safe drug, may develop new therapeutic strategies for UTUC.

PMID:39757744 | DOI:10.1002/cam4.70567

Categories: Literature Watch

Translational Research on Pre-eclampsia with Existing Drugs Targeting Antioxidant Molecules

Sun, 2025-01-05 06:00

Yakugaku Zasshi. 2025;145(1):43-47. doi: 10.1248/yakushi.24-00174-1.

ABSTRACT

Pre-eclampsia, a type of hypertensive disorders of pregnancy (HDP), is characterized by hypertension and organ dysfunction that develops or worsens after 20 weeks of gestation. Although symptomatic management using antihypertensive medications has been adopted, definitive treatments other than pregnancy termination remain unavailable to halt disease progression. Research on heme oxygenase (HO)-1, a molecule with anti-inflammatory and antioxidative properties, has shown that a pharmacological increase in placental HO-1 expression and activity may ameliorate this condition; therefore, HO-1 is a promising therapeutic target for this disorder. Medications with properties that can be used during pregnancy are strong candidates for repurposing. In this article, I discuss the potential applications of proton pump inhibitors in the prevention or treatment of preeclampsia by presenting our foundational research and subsequent observational and interventional clinical studies.

PMID:39756924 | DOI:10.1248/yakushi.24-00174-1

Categories: Literature Watch

Development of Research Foundation for Comprehensive Articulation of Drug Effects

Sun, 2025-01-05 06:00

Biol Pharm Bull. 2025;48(1):1-5. doi: 10.1248/bpb.b24-00509.

ABSTRACT

As unexpected adverse events and successful drug repositioning have shown, drug effects are complex and include aspects not recognized by developers. How can we understand these unrecognized drug effects? Drug effects can be numerized by encompassing biological responses to drugs. For instance, the transcriptome data of cultured cells and toxicopathological images of mice treated with a compound represent the effects of the compound in vitro and in vivo, respectively. As a next step, we focused on pattern recognition, a data science framework to extract essentially important low-dimensional latent variables from high-dimensional observed data such as latent variable models. Latent variables are low-dimensional, allowing us to visualize drug effects in an easily recognizable form, such as a radar chart. This bird's-eye view of drug effects enables us to compare them with existing knowledge, potentially articulating the effects of drugs as the known knowns and known unknowns. We believe that the three-step strategy of numerization, visualization, and articulation will allow us to understand drug effects comprehensively, and we are currently verifying this approach. In this review, we will introduce these candidate studies and hope to share our interest in "pattern recognition of biological responses," the pillar of our group.

PMID:39756864 | DOI:10.1248/bpb.b24-00509

Categories: Literature Watch

Immune checkpoint blockade in experimental bacterial infections

Sun, 2025-01-05 06:00

J Infect. 2025 Jan 3:106391. doi: 10.1016/j.jinf.2024.106391. Online ahead of print.

ABSTRACT

Immune checkpoint inhibitors designed to reinvigorate immune responses suppressed by cancer cells have revolutionized cancer therapy. Similarities in immune dysregulation between cancer and infectious diseases has prompted investigations into the role of immune checkpoints in infectious diseases, including the therapeutic potential of immune checkpoint blockade and drug repurposing. While most research has centered around viral infections, data for bacterial infections are emerging. This systematic review reports on the in vivo effect of immune checkpoint blockade on bacterial burden and selected immune responses in preclinical studies of bacterial infection, aiming to assess if there could be a rationale for using immunotherapy for bacterial infections. Of the 42 analyzed studies, immune checkpoint blockade reduced the bacterial burden in 60% of studies, had no effect in 28% and increased the bacterial burden in 12%. Findings suggest that the effect of immune checkpoint blockade on bacterial burden is context-dependent and in part relates to the pathogen. Further preclinical research is required to understand how the therapeutic effect of immune checkpoint blockade is mediated in different bacterial infections, and if immune checkpoint blockade can be used as an adjuvant to conventional infection management strategies.

PMID:39756696 | DOI:10.1016/j.jinf.2024.106391

Categories: Literature Watch

Revising EU pharmaceutical legislation: will it foster drug repurposing?

Sun, 2025-01-05 06:00

Drug Discov Today. 2025 Jan 3:104286. doi: 10.1016/j.drudis.2024.104286. Online ahead of print.

ABSTRACT

Repurposing off-patent drugs can be a potential source of low-cost treatments for patients with unmet medical needs. Here, we review the proposed new European Union (EU) pharmaceutical legislation in which two articles address drug repurposing. We find certain barriers hindering the adoption of these new incentives by academic and not-for-profit stakeholders, including lack of knowledge on regulatory aspects, pharmacovigilance, and restrictions in data protection. To further empower the intended stakeholders of the legislation, these initiatives can be strengthened by creating additional scientific, regulatory, and health technology assessment (HTA) support for not-for-profit repurposers, and by determining fair data protection periods and pricing policies. To support drug repurposing, Europe should work toward a comprehensive drug-repurposing strategy that fosters the repurposing of generic, shelved, and protected drugs.

PMID:39756647 | DOI:10.1016/j.drudis.2024.104286

Categories: Literature Watch

BLOOD PROTEOMICS AND MULTIMODAL RISK PROFILING of human volunteers after incision injury: a translational study for advancing Personalized Pain Management After Surgery

Sun, 2025-01-05 06:00

Pharmacol Res. 2025 Jan 3:107580. doi: 10.1016/j.phrs.2025.107580. Online ahead of print.

ABSTRACT

A significant number of patients develop chronic pain after surgery, but prediction of those who are at risk is currently not possible. Thus, prognostic prediction models that include bio-psycho, social and physiological factors in line with the complex nature of chronic pain would be urgently required. Here, we performed a translational study in male volunteers before an experimental incision injury. We determined multi-modal factors ranging from pain characteristics, psychological questionnaires to blood proteomics. Outcome measures after incision were pain intensity ratings and the extent of the area of hyperalgesia to mechanical stimuli surrounding the incision as a proxy of central sensitization. A multi-step logistic regression analysis was performed to predict outcome measures based on feature combinations using data-driven cross-validation and prognostic model development. Phenotype-based stratification resulted in the identification of low and high responders for both outcome measures. Regression analysis revealed prognostic proteomic, specific psychophysical and psychological parameters. A combinatorial set of distinct parameters enabled us to predict outcome measures with increased accuracy compared to using single features. Remarkably, in high responders, protein network analysis suggested a protein signature characteristic for low-grade inflammation. Alongside, in silico drug repurposing highlighted potential treatment options employing antidiabetic and anti-inflammatory drugs. Taken together, we present here an integrated pipeline that harnesses bio-psycho-physiological data for prognostic prediction in a translational approach. This pipeline opens new avenues for clinical application with the goal tostratify patients and identify potential new targets as well as mechanistic correlates for postsurgical pain. GERMAN CLINICAL TRIALS REGISTRY: (DRKS-ID: DRKS00016641).

PMID:39756555 | DOI:10.1016/j.phrs.2025.107580

Categories: Literature Watch

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