NIH Funding Opportunities (Notices, PA, RFA)

Detecting Cognitive Impairment, Including Dementia, in Primary Care and Other Everyday Clinical Settings for the General Public and in Health Disparities Populations (UG3/UH3)
NIDA Avant-Garde Award Program for HIV/AIDS and Drug Use Research (DP1)
Inter-organelle Communication in Cancer (R21)
Inter-organelle Communication in Cancer (R01)
Notice of NIAIDs Interest in Biomedical Research in non-AIDS associated, Pulmonary Non-Tuberculous Mycobacterial (NTM) Infections
Marijuana, Prescription Opioid, or Prescription Benzodiazepine Drug Use Among Older Adults (R21)
Marijuana, Prescription Opioid, or Prescription Benzodiazepine Drug Use Among Older Adults (R03)
Marijuana, Prescription Opioid, or Prescription Benzodiazepine Drug Use Among Older Adults (R01)
Hearing Health Care for Adults: Improving Access and Affordability (R01)
Notice of Change to Key Dates in PAR-17-093 "Academic-Industrial Partnerships to Translate and Validate in vivo Cancer Imaging Systems (R01)"
Notice of Clarification of Applications Accepted in Response to PAR-16-034, Ancillary Studies to Major Ongoing Clinical Research Studies to Advance Areas of Scientific Interest within the Mission of the NIDDK (R01)
Notice of Intent to Publish a Funding Opportunity Announcement for the National Centers for Translational Research in Reproduction and Infertility (P50)
Notice of NHGRI Participation in PAR-15-287 "Opportunities for Collaborative Research at the NIH Clinical Center (U01)"
Notice of Change to Key Dates in PAR-17-129 " Quantitative Imaging Tools and Methods for Cancer Response Assessment (U01)"
Notice of Change to Key Dates in PAR-17-128 "Quantitative Imaging Tools and Methods for Cancer Therapy Response Assessment (UG3/UH3)"
Notice of Intent to Publish a Funding Opportunity Announcement for Continuation of Existing Grant Based Epidemiology Cohort Studies in Heart, Lung, Blood, Sleep Diseases and Disorders (U01)
Notice of Intent to Publish a Funding Opportunity Announcement for New Epidemiology Cohort Studies in Heart, Lung, Blood, and Sleep Diseases and Disorders (U01)
Notice of Change in the Eligibility of Foreign Components in PAR-14-260 "Interventions for Health Promotion and Disease Prevention in Native American Communities (R01)"
Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.
Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.
Nature. 2016 Sep 29;537(7622):698-702
Authors: Olsson A, Venkatasubramanian M, Chaudhri VK, Aronow BJ, Salomonis N, Singh H, Grimes HL
Abstract
Delineating hierarchical cellular states, including rare intermediates and the networks of regulatory genes that orchestrate cell-type specification, are continuing challenges for developmental biology. Single-cell RNA sequencing is greatly accelerating such research, given its power to provide comprehensive descriptions of genomic states and their presumptive regulators. Haematopoietic multipotential progenitor cells, as well as bipotential intermediates, manifest mixed-lineage patterns of gene expression at a single-cell level. Such mixed-lineage states may reflect the molecular priming of different developmental potentials by co-expressed alternative-lineage determinants, namely transcription factors. Although a bistable gene regulatory network has been proposed to regulate the specification of either neutrophils or macrophages, the nature of the transition states manifested in vivo, and the underlying dynamics of the cell-fate determinants, have remained elusive. Here we use single-cell RNA sequencing coupled with a new analytic tool, iterative clustering and guide-gene selection, and clonogenic assays to delineate hierarchical genomic and regulatory states that culminate in neutrophil or macrophage specification in mice. We show that this analysis captured prevalent mixed-lineage intermediates that manifested concurrent expression of haematopoietic stem cell/progenitor and myeloid progenitor cell genes. It also revealed rare metastable intermediates that had collapsed the haematopoietic stem cell/progenitor gene expression programme, instead expressing low levels of the myeloid determinants, Irf8 and Gfi1 (refs 9, 10, 11, 12, 13). Genetic perturbations and chromatin immunoprecipitation followed by sequencing revealed Irf8 and Gfi1 as key components of counteracting myeloid-gene-regulatory networks. Combined loss of these two determinants 'trapped' the metastable intermediate. We propose that mixed-lineage states are obligatory during cell-fate specification, manifest differing frequencies because of their dynamic instability and are dictated by counteracting gene-regulatory networks.
PMID: 27580035 [PubMed - indexed for MEDLINE]
Transcriptional Regulation by ATOH1 and its Target SPDEF in the Intestine.
Transcriptional Regulation by ATOH1 and its Target SPDEF in the Intestine.
Cell Mol Gastroenterol Hepatol. 2017 Jan;3(1):51-71
Authors: Lo YH, Chung E, Li Z, Wan YW, Mahe MM, Chen MS, Noah TK, Bell KN, Yalamanchili HK, Klisch TJ, Liu Z, Park JS, Shroyer NF
Abstract
BACKGROUND & AIMS: The transcription factor atonal homolog 1 (ATOH1) controls the fate of intestinal progenitors downstream of the Notch signaling pathway. Intestinal progenitors that escape Notch activation express high levels of ATOH1 and commit to a secretory lineage fate, implicating ATOH1 as a gatekeeper for differentiation of intestinal epithelial cells. Although some transcription factors downstream of ATOH1, such as SPDEF, have been identified to specify differentiation and maturation of specific cell types, the bona fide transcriptional targets of ATOH1 still largely are unknown. Here, we aimed to identify ATOH1 targets and to identify transcription factors that are likely to co-regulate gene expression with ATOH1.
METHODS: We used a combination of chromatin immunoprecipitation and messenger RNA-based high-throughput sequencing (ChIP-seq and RNA-seq), together with cell sorting and transgenic mice, to identify direct targets of ATOH1, and establish the epistatic relationship between ATOH1 and SPDEF.
RESULTS: By using unbiased genome-wide approaches, we identified more than 700 genes as ATOH1 transcriptional targets in adult small intestine and colon. Ontology analysis indicated that ATOH1 directly regulates genes involved in specification and function of secretory cells. De novo motif analysis of ATOH1 targets identified SPDEF as a putative transcriptional co-regulator of ATOH1. Functional epistasis experiments in transgenic mice show that SPDEF amplifies ATOH1-dependent transcription but cannot independently initiate transcription of ATOH1 target genes.
CONCLUSIONS: This study unveils the direct targets of ATOH1 in the adult intestines and illuminates the transcriptional events that initiate the specification and function of intestinal secretory lineages.
PMID: 28174757 [PubMed - in process]